Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SPO2624Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199. (151 aa)    
Predicted Functional Partners:
SPO1368
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.772
SPO1425
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.771
SPO0223
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.766
SPO2631
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.755
SPO1367
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.753
SPO3179
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
  
     0.752
SPO0233
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.746
putR
Proline dehydrogenase transcriptional activator; Identified by similarity to SP:Q52710; match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.740
doeX
AsnC/Lrp-like DNA-binding protein, transcriptional regulator; Identified by match to protein family HMM PF01037; PMID: 19362561.
  
     0.735
SPO2625
Hypothetical protein; Identified by similarity to GB:AAM40972.1.
       0.610
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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