STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2626TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786. (465 aa)    
Predicted Functional Partners:
SPO2627
TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
 
 0.963
SPO2628
TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.911
SPO1721
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.848
SPO2545
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
  
 0.798
dctP
TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
 
  
 0.667
SPO2630
C4-dicarboxylate transport sensor protein; Identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.511
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
  
  
 0.479
SPO2629
C4-dicarboxylate transport transcriptional regulatory protein; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
     0.437
uehA
Ectoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family.
 
  
 0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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