close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2631Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199. (153 aa)    
Predicted Functional Partners:
SPO2624
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.755
SPO0233
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.722
SPO2633
Hypothetical protein; Identified by similarity to GB:CAE29655.1.
 
     0.643
SPO2629
C4-dicarboxylate transport transcriptional regulatory protein; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
     
 0.617
SPO2630
C4-dicarboxylate transport sensor protein; Identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.613
cobA-1
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.
  
  
 0.548
SPO2634
Sulfite reductase, putative; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460.
     
 0.436
cysH
Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
    0.418
SPO2636
Hypothetical protein; Identified by similarity to PIR:AF3472.
       0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (54%) [HD]