Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2642YeeE/YedE family protein; Identified by similarity to GB:BAC48787.1; match to protein family HMM PF04143. (194 aa)    
Predicted Functional Partners:
SPO2641
Membrane protein, putative.
 
    0.957
SPO2644
VWA domain containing CoxE-like family protein; Identified by match to protein family HMM PF05762.
       0.551
SPO2643
Hypothetical protein; Identified by Glimmer2; putative.
       0.550
SPO2639
Molybdopterin biosynthesis protein; Identified by match to protein family HMM PF00994.
       0.467
SPO2640
Identified by match to protein family HMM PF02625.
       0.465
SPO2361
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.449
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.415
SPO2645
Protease, S2 family; Identified by similarity to SP:P39790; Belongs to the peptidase S1B family.
       0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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