Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2644VWA domain containing CoxE-like family protein; Identified by match to protein family HMM PF05762. (420 aa)    
Predicted Functional Partners:
SPO2639
Molybdopterin biosynthesis protein; Identified by match to protein family HMM PF00994.
 
     0.808
SPO2646
Hypothetical protein; Identified by similarity to GB:CAE29242.1.
 
     0.788
coxL-1
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19913; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.779
SPO3901
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.776
coxG
Carbon monoxide dehydrogenase operon G protein; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.775
SPO2643
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO1520
Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.
 
     0.766
SPO3019
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.756
SPO2393
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.745
coxD
Carbon monoxide dehydrogenase D protein; Identified by similarity to GB:CAA57830.1.
 
     0.743
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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