STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2646Hypothetical protein; Identified by similarity to GB:CAE29242.1. (302 aa)    
Predicted Functional Partners:
SPO2644
VWA domain containing CoxE-like family protein; Identified by match to protein family HMM PF05762.
 
     0.788
coxE
Carbon monoxide dehydrogenase E protein; Identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762.
 
     0.767
coxL-1
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19913; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.747
SPO1520
Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.
 
   
 0.723
SPO3901
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.717
coxG
Carbon monoxide dehydrogenase operon G protein; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.702
SPO2393
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.671
SPO3019
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.636
SPO2650
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
     
 0.566
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
       0.565
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.