STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2651Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (359 aa)    
Predicted Functional Partners:
SPO2648
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.949
SPO2650
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
     0.935
SPO2652
Hypothetical protein; Identified by Glimmer2; putative.
     0.870
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
 
    
0.827
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
 
    
0.821
SPO2922
Hypothetical protein; Identified by similarity to PIR:B95911.
 
     0.757
cobM
Precorrin-4 C11-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; Belongs to the precorrin methyltransferase family.
  
  
 0.750
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.721
SPO3540
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG032; identified in over 20 other Roseobacter strains'.
  
     0.690
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.689
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.