STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2657ACC deaminase/D-cysteine desulfhydrase family; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01275. (385 aa)    
Predicted Functional Partners:
aspC-1
Aspartate aminotransferase; Identified by similarity to SP:Q06191.
     
  0.900
aspC-2
Aspartate aminotransferase; Identified by similarity to SP:Q02635; match to protein family HMM PF00155.
     
  0.900
tyrB
Aromatic amino acid aminotransferase; Identified by similarity to SP:P95468; match to protein family HMM PF00155.
     
  0.900
gltI
Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
  
 0.741
SPO2656
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
 
   0.730
SPO2662
Aspartate racemase, putative; Contains tandem repeat of aspartate racemase domain. Aspartate racemase is normally a homodimer; identified by similarity to PIR:T08467; match to protein family HMM PF01177; match to protein family HMM TIGR00035; Belongs to the aspartate/glutamate racemases family.
 
     0.581
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.553
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
  
    0.528
gltK
Glutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.526
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
      
 0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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