Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltKGlutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (218 aa)    
Predicted Functional Partners:
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
 0.998
gltI
Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
 0.984
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 
0.970
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
 
 0.954
SPO0522
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666.
 
 0.953
glnQ
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 0.951
SPO2664
Polar amino acid uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 0.950
SPO2365
Amino acid ABC transporter, permease protein; Identified by similarity to SP:Q52664; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
0.923
SPO1307
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
    0.889
SPO0520
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; Identified by similarity to SP:Q52664.
 
0.832
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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