STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2666Polar amino acid uptake family ABC transporter, permease protein; Identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (267 aa)    
Predicted Functional Partners:
SPO2664
Polar amino acid uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 0.994
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
 
 0.988
gltI
Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
 0.975
SPO2667
Assignment partly based on membership in polar amino acid ABC transporter gene cluster and on multiple alignment to members of TCDB family 3.A.1.3; identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
 0.962
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
  
 
0.925
SPO3040
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00497.
 
 0.893
glnQ
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 
 0.888
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
 
 
 0.883
SPO0522
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666.
 
 
 0.881
SPO2665
Assignment partly based on membership in polar amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
0.853
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.