STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2671Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056. (260 aa)    
Predicted Functional Partners:
SPO2672
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.999
SPO1007
Identified by match to protein family HMM PF02470.
 
 0.996
SPO3726
Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.
 
 
 0.968
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.861
SPO2673
Paraquat-inducible protein A, putative; Identified by match to protein family HMM PF04403.
       0.861
SPO3409
Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.814
SPO3727
VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.
 
   
 0.782
SPO2669
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.714
SPO0079
ABC transporter, ATP-binding protein; Identified by similarity to GB:AAM48706.1; match to protein family HMM PF00005.
  
  0.695
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.662
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.