STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2689Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (365 aa)    
Predicted Functional Partners:
SPO3288
Ferric iron ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.964
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.941
SPO0189
Hypothetical protein; Identified by similarity to GB:AAM42620.1.
  
 
 0.837
SPO3005
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
   
0.832
SPO0703
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.766
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.727
SPO1546
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005.
 
    
0.714
SPO2699
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.645
SPO1607
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
 
 
 0.619
potI
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
 
 
 0.616
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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