STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2690Hypothetical protein; Identified by similarity to GB:CAB61860.1. (351 aa)    
Predicted Functional Partners:
SPO2049
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
    0.833
SPO0624
Hypothetical protein; Identified by similarity to PIR:B75629.
   
   0.594
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
   
 0.573
SPO1247
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.562
SPO2689
Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
     
 0.542
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
  
 0.531
SPO2692
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
   
 
 0.501
SPO2691
Hypothetical protein; Identified by similarity to GB:CAD72185.1.
       0.471
SPO0540
Mercuric reductase, putative; Identified by similarity to SP:P17239.
 
 
 0.449
pcm-2
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
 
     0.431
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.