Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
SPO2696Beta-lactamase, putative; Identified by match to protein family HMM PF00144. (375 aa)    
Predicted Functional Partners:
SPO2701
Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
     0.912
SPO2699
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.839
SPO2697
acyl-CoA synthetase, putative; Identified by similarity to GB:AAN69320.1; similarity to GB:BAC79255.1; match to protein family HMM PF02629.
 
     0.832
SPO2700
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.817
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
       0.773
SPO2704
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
     0.580
SPO2702
Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
     0.571
SPO2703
Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853.
       0.495
SPO1233
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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