Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO2699Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (265 aa)    
Predicted Functional Partners:
SPO2700
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.999
SPO3474
Polyamine ABC transporter, permease protein; Assignment based partly on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF00528.
 0.998
SPO2701
Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
 0.995
SPO2702
Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 0.993
SPO2009
Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528.
 
 0.987
potA-3
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.987
SPO3473
Assignment partly based on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF01547.
 
 0.982
potD
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.966
potH
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 
0.965
potB
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
 
0.964
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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