STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2700Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (292 aa)    
Predicted Functional Partners:
SPO2699
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.999
SPO3475
Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
 
 0.998
SPO2702
Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.992
SPO2701
Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
 
 0.991
potI
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
  
 0.985
potA-3
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 0.972
SPO1607
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
  
 0.962
SPO2008
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
  
0.957
SPO3473
Assignment partly based on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF01547.
 
 
 0.949
SPO3474
Polyamine ABC transporter, permease protein; Assignment based partly on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF00528.
  
  
 
0.917
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.