Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2705Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (317 aa)    
Predicted Functional Partners:
caiD-1
carnitinyl-CoA dehydratase; Identified by similarity to SP:P31551; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.943
SPO0147
enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.813
SPO2703
Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853.
 
  
 0.809
SPO2707
Identified by match to protein family HMM PF00296.
 
     0.805
SPO1435
Identified by match to protein family HMM PF05853.
 
  
 0.801
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.759
SPO0836
Hypothetical protein; Identified by similarity to GB:BAB48851.1.
 
  
 0.700
SPO2004
Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.
 
  
 0.697
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.649
bktB
Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.639
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.