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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2705Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (317 aa)    
Predicted Functional Partners:
caiD-1
carnitinyl-CoA dehydratase; Identified by similarity to SP:P31551; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.938
SPO2707
Identified by match to protein family HMM PF00296.
 
     0.806
SPO2703
Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853.
 
  
 0.803
SPO0147
enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.799
SPO1435
Identified by match to protein family HMM PF05853.
 
  
 0.794
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.729
SPO0836
Hypothetical protein; Identified by similarity to GB:BAB48851.1.
 
   
 0.693
SPO2004
Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853.
 
  
 0.687
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
 
   
 0.620
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.605
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.