STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2707Identified by match to protein family HMM PF00296. (344 aa)    
Predicted Functional Partners:
SPO2712
Hypothetical protein; Identified by similarity to PIR:C95315; match to protein family HMM PF06684.
 
     0.893
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
 
  
 0.870
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
   
 0.810
caiD-1
carnitinyl-CoA dehydratase; Identified by similarity to SP:P31551; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   
 0.807
SPO2705
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
     0.806
SPO2711
Identified by match to protein family HMM PF01613; match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
  
 0.616
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
 
 
 
0.603
SPO3618
Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.
 
  
 0.602
SPO2701
Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
    0.587
SPO1806
Flavin reductase domain protein; Identified by match to protein family HMM PF01613.
 
  
 0.571
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.