STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2711Identified by match to protein family HMM PF01613; match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (703 aa)    
Predicted Functional Partners:
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
 
 
 0.920
bluB
Cobalamin biosynthesis protein BluB; Identified by similarity to PIR:S52225; match to protein family HMM PF00881.
  
 
 0.918
ribF
Riboflavin biosynthesis protein RibF; Identified by similarity to SP:P73651; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
  
 
 0.913
SPO2709
Endoribonuclease L-PSP, putative.
  
  
 0.809
SPO2712
Hypothetical protein; Identified by similarity to PIR:C95315; match to protein family HMM PF06684.
       0.763
SPO2707
Identified by match to protein family HMM PF00296.
  
  
 0.603
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 
 0.573
caiD-1
carnitinyl-CoA dehydratase; Identified by similarity to SP:P31551; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.568
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.542
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.528
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.