STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2711Identified by match to protein family HMM PF01613; match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (703 aa)    
Predicted Functional Partners:
bluB
Cobalamin biosynthesis protein BluB; Identified by similarity to PIR:S52225; match to protein family HMM PF00881.
  
 
 0.920
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
 
  
 0.915
ribF
Riboflavin biosynthesis protein RibF; Identified by similarity to SP:P73651; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
  
 
  0.909
SPO2709
Endoribonuclease L-PSP, putative.
  
  
 0.811
SPO2712
Hypothetical protein; Identified by similarity to PIR:C95315; match to protein family HMM PF06684.
       0.780
SPO2707
Identified by match to protein family HMM PF00296.
  
  
 0.616
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
  
 0.600
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.583
paaZ
Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575.
  
 0.552
SPO0316
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
     
 0.539
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.