STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2712Hypothetical protein; Identified by similarity to PIR:C95315; match to protein family HMM PF06684. (204 aa)    
Predicted Functional Partners:
SPO2707
Identified by match to protein family HMM PF00296.
 
     0.893
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
 
     0.872
SPO2711
Identified by match to protein family HMM PF01613; match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
       0.780
SPO2709
Endoribonuclease L-PSP, putative.
       0.741
SPO2708
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
     0.660
SPO0819
Amidohydrolase domain protein; Identified by match to protein family HMM PF01979.
 
     0.508
SPO1589
Identified by match to protein family HMM PF02627.
 
     0.492
SPO2705
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
       0.458
caiD-1
carnitinyl-CoA dehydratase; Identified by similarity to SP:P31551; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.458
SPO2701
Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409.
 
     0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.