Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2714Peptidase, M50 family; Identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163. (715 aa)    
Predicted Functional Partners:
SPO2715
GAF domain protein; Identified by match to protein family HMM PF01590.
 
   
 0.952
SPO2716
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451.
 
    0.869
secA2
SecA DEAD domain protein/helicase, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
   
 0.834
SPO2718
Hypothetical protein; Identified by similarity to GB:CAD84993.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.819
SPO2717
SapC protein, putative; Identified by similarity to GB:AAC97196.1; match to protein family HMM PF07277.
 
     0.766
SPO1496
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.759
SPO1240
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.589
SPO1495
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.473
SPO0293
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.400
SPO0921
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873.
  
 
 0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.