Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SPO2716Type I secretion target repeat protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451. (8093 aa)    
Predicted Functional Partners:
SPO2717
SapC protein, putative; Identified by similarity to GB:AAC97196.1; match to protein family HMM PF07277.
 
   
 0.881
SPO2714
Peptidase, M50 family; Identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163.
 
    0.869
SPO2715
GAF domain protein; Identified by match to protein family HMM PF01590.
 
  
 0.868
SPO2718
Hypothetical protein; Identified by similarity to GB:CAD84993.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.806
SPO1626
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 
 0.719
SPO3839
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 
 0.611
SPO0362
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 
 0.586
secA2
SecA DEAD domain protein/helicase, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
  
  
 0.469
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
 
 
 0.450
SPO1233
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.444
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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