STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2717SapC protein, putative; Identified by similarity to GB:AAC97196.1; match to protein family HMM PF07277. (260 aa)    
Predicted Functional Partners:
SPO2716
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451.
 
   
 0.881
SPO2718
Hypothetical protein; Identified by similarity to GB:CAD84993.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.844
SPO2715
GAF domain protein; Identified by match to protein family HMM PF01590.
 
     0.769
SPO2714
Peptidase, M50 family; Identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163.
 
     0.767
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
       0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.