Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO2718Hypothetical protein; Identified by similarity to GB:CAD84993.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (271 aa)    
Predicted Functional Partners:
SPO2717
SapC protein, putative; Identified by similarity to GB:AAC97196.1; match to protein family HMM PF07277.
 
     0.844
SPO2715
GAF domain protein; Identified by match to protein family HMM PF01590.
 
     0.836
SPO1240
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 0.826
SPO2714
Peptidase, M50 family; Identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163.
 
   
 0.819
SPO2716
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451.
 
  
 0.806
SPO1496
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
  
 0.610
SPO2331
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.608
SPO1397
Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
   
 0.601
SPO0920
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.565
SPO1526
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.565
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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