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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I restriction-modification system, R subunit; Identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348. (1127 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
 
 
 0.998
hsdS
Type I restriction-modification system, S subunit; Identified by similarity to SP:P05719; match to protein family HMM PF01420.
 
  
 0.994
SPO3899
Hypothetical protein; Identified by similarity to GB:BAD02160.1; match to protein family HMM PF01863.
 
   
 0.952
SPO2736
Hypothetical protein; Identified by similarity to GB:CAD79234.1.
 
     0.877
SPO2981
Hypothetical protein; Identified by similarity to GB:CAC67530.1.
  
    0.838
SPO3622
Hypothetical protein; Identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863.
 
   
 0.519
SPO1233
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.514
SPO2133
Outer membrane protein, putative; Identified by similarity to GB:AAL60203.1.
   
    0.467
SPO2999
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.467
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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