STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2738Lipoprotein, putative. (293 aa)    
Predicted Functional Partners:
SPO2741
DNA polymerase III, delta prime subunit, putative.
 
     0.872
SPO2739
D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.
       0.831
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.831
SPO2742
Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.
       0.831
SPO2743
Hypothetical protein; Identified by similarity to GB:AAK23796.1.
       0.831
SPO1320
Lipoprotein, putative.
 
   
 0.759
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.757
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.740
SPO2744
Malonate transporter, putative; Identified by similarity to GB:AAC45458.1; match to protein family HMM PF03547.
       0.740
SPO3095
Membrane protein, putative.
 
     0.733
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.