Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2745Hypothetical protein; Identified by similarity to GB:AAS06255.1. (255 aa)    
Predicted Functional Partners:
SPO2744
Malonate transporter, putative; Identified by similarity to GB:AAC45458.1; match to protein family HMM PF03547.
       0.773
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
  
 0.725
cobL
precorrin-6Y C5,15-methyltransferase (decarboxylating); Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468.
     
 0.633
SPO2743
Hypothetical protein; Identified by similarity to GB:AAK23796.1.
     
 0.615
SPO2739
D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.
       0.601
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.601
SPO2741
DNA polymerase III, delta prime subunit, putative.
       0.601
SPO2742
Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.
       0.601
SPO2738
Lipoprotein, putative.
       0.564
SPO3263
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.529
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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