Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2746Hypothetical protein; Identified by Glimmer2; putative. (428 aa)    
Predicted Functional Partners:
SPO2748
Hypothetical protein; Identified by similarity to PIR:AG2090.
 
     0.613
SPO2208
Hypothetical protein; Identified by similarity to GB:BAB53466.1.
  
     0.600
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
SPO1909
Hypothetical protein; Identified by similarity to PIR:AB2272.
 
     0.571
SPO2289
Hypothetical protein; Identified by similarity to PIR:E82389.
  
     0.560
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.559
SPO3174
Hypothetical protein; Identified by similarity to GB:AAK24192.1.
  
     0.558
SPO2747
Diguanylate cyclase, putative; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
     0.553
SPO0867
Hypothetical protein; Identified by similarity to GB:AAN29006.1; match to protein family HMM PF04357.
  
   
 0.551
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.527
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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