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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2749Membrane protein, putative; Identified by similarity to GB:AAQ58806.1. (591 aa)    
Predicted Functional Partners:
boxA
benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175.
    
 0.704
SPO2748
Hypothetical protein; Identified by similarity to PIR:AG2090.
 
     0.679
SPO1280
Hypothetical protein; Identified by similarity to SP:Q92W37; match to protein family HMM PF05114; Belongs to the UPF0276 family.
   
    0.642
SPO1529
Hypothetical protein; Identified by similarity to GB:BAC14468.1.
  
 
 0.640
SPO2747
Diguanylate cyclase, putative; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.622
SPO1281
Hypothetical protein; Identified by similarity to GB:CAE31790.1.
  
    0.600
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
  
 
 0.591
SPO2952
trkA domain protein; Identified by match to protein family HMM PF02080.
  
 
 0.591
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
   
 
 0.558
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
       0.553
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.