STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2751HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549. (229 aa)    
Predicted Functional Partners:
SPO0415
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF02826.
    
 0.907
glcF
Glycolate oxidase, iron-sulfur subunit; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.
    
 0.907
glcD
Glycolate oxidase, GlcD subunit; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913.
    
 0.906
glcE
Glycolate oxidase, GlcE subunit; Identified by similarity to SP:P52073; match to protein family HMM PF01565.
    
 0.906
SPO0632
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
    
  0.902
SPO2752
Hypothetical protein; Identified by similarity to GB:AAN33802.1.
 
     0.792
SPO2753
Diguanylate cyclase, putative/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.622
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
       0.513
SPO2749
Membrane protein, putative; Identified by similarity to GB:AAQ58806.1.
 
    0.511
moaA-2
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.500
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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