STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2752Hypothetical protein; Identified by similarity to GB:AAN33802.1. (93 aa)    
Predicted Functional Partners:
SPO2751
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
 
     0.822
SPO2753
Diguanylate cyclase, putative/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.731
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.486
SPO2987
Lipoprotein, putative; Identified by similarity to GB:AAB93481.1.
  
     0.468
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
       0.435
SPO0805
Hypothetical protein; Identified by similarity to GB:CAE25511.1.
  
     0.434
SPO2749
Membrane protein, putative; Identified by similarity to GB:AAQ58806.1.
 
     0.431
SPO0934
Membrane protein, putative.
  
     0.430
SPO3336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.425
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.