Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2758Hypothetical protein; Identified by similarity to GB:CAE28567.1. (130 aa)    
Predicted Functional Partners:
SPO2759
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
 
     0.865
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.670
SPO2756
RNA polymerase sigma-70 factor, ECF family; Identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
       0.593
SPO2755
Hypothetical protein; Identified by Glimmer2; putative.
       0.538
SPO3072
SURF1 family protein.
 
     0.535
SPO2754
Hypothetical protein; Identified by similarity to GB:AAK24713.1.
       0.513
SPO0541
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.512
SPO1766
Hypothetical protein; Identified by similarity to GB:CAA06860.1.
  
   
 0.503
SPO1678
Hypothetical protein; Identified by similarity to PIR:AE3305.
  
     0.502
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
       0.502
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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