Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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SPO2759Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (235 aa)    
Predicted Functional Partners:
SPO2758
Hypothetical protein; Identified by similarity to GB:CAE28567.1.
 
     0.865
SPO2174
Identified by match to protein family HMM PF00753.
 
 
   0.719
nnrD
YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
  
 0.626
SPO2754
Hypothetical protein; Identified by similarity to GB:AAK24713.1.
 
     0.552
SPO3758
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.540
SPO2756
RNA polymerase sigma-70 factor, ECF family; Identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
       0.539
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.522
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
 0.489
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
   
   0.480
SPO2755
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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