STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2795Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (396 aa)    
Predicted Functional Partners:
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
  
 0.804
SPO2794
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ivD
isovaleryl-CoA dehydrogenase; Identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
       0.668
SPO0556
UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.613
SPO3871
Identified by match to protein family HMM PF00483.
  
  
 0.598
gph-2
Phosphoglycolate phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
       0.586
SPO1534
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.576
SPO0716
Hypothetical protein; Identified by similarity to PIR:D82434.
  
     0.572
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
 
 0.551
SPO0838
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.521
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.