STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2802Bmp family protein; Identified by match to protein family HMM PF02608. (351 aa)    
Predicted Functional Partners:
SPO2803
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.989
SPO2804
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
SPO2805
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
SPO0649
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.950
SPO0650
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.947
SPO0376
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.936
SPO0651
Sugar ABC transporter, ATP-binding protein.
 
 
 0.932
SPO0378
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.931
SPO0377
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.928
SPO0648
Bmp family protein.
  
  
 
0.922
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.