STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2814Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P42061; match to protein family HMM PF00496. (573 aa)    
Predicted Functional Partners:
SPO2815
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 
 
 0.922
SPO2816
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 
 
 0.921
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.629
SPO2813
Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 
 0.561
argE-1
Acetylornithine deacetylase; Identified by similarity to SP:O68873; match to protein family HMM PF01546; match to protein family HMM TIGR01892.
 
     0.554
SPO0100
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.420
SPO2066
ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
  
 
0.413
yejA
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
  
 
 0.413
SPO0101
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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