Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2817YeeE/YedE family protein; Identified by similarity to GB:CAE29903.1; match to protein family HMM PF04143. (357 aa)    
Predicted Functional Partners:
soxA
Diheme cytochrome c SoxA; Identified by similarity to GB:AAF99434.1.
 
  
 0.782
soxZ
Sulfur oxidation Z protein; Identified by similarity to GB:CAB94381.1.
 
   
 0.778
soxS
Regulatory protein SoxS; Identified by similarity to GB:AAO11779.1.
 
     0.773
soxD
Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034.
 
  
 0.768
soxW
Thioredoxin SoxW; Identified by similarity to GB:CAB94378.1.
 
     0.766
soxY
Sulfur oxidation Y protein; Identified by similarity to GB:CAB94380.1; match to protein family HMM TIGR01409.
 
     0.763
soxB
Sulfur oxidation B protein; Identified by similarity to GB:CAA55824.2; match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01409; Belongs to the 5'-nucleotidase family.
 
     0.758
soxC
Sulfur oxidation molybdopterin C protein; Identified by similarity to PIR:T46965; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409.
 
   
 0.756
soxX
Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034.
 
     0.749
SPO3273
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.707
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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