SPO2827 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2827

Isoquinoline 1-oxidoreductase, beta subunit, putative; Identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409. (746 aa)

Predicted Functional Partners:

iorA

0.999

cycG

0.928

coxS-2

0.894

coxS-1

0.874

SPO2640

0.780

SPO1627

0.708

SPO2825

0.677

SPO0830

0.532

SPO0831

0.514

SPO1520

0.514

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0830	SPO0831	SPO0830	SPO0831	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	0.999
SPO0830	SPO1520	SPO0830	SPO1520	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	0.919
SPO0830	SPO1627	SPO0830	SPO1627	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Hypothetical protein.	0.649
SPO0830	SPO2640	SPO0830	SPO2640	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Identified by match to protein family HMM PF02625.	0.714
SPO0830	SPO2827	SPO0830	SPO2827	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Isoquinoline 1-oxidoreductase, beta subunit, putative; Identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409.	0.532
SPO0830	coxS-1	SPO0830	SPO1518	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Carbon-monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.676
SPO0830	coxS-2	SPO0830	SPO2398	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.719
SPO0830	iorA	SPO0830	SPO2826	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Isoquinoline 1-oxidoreductase, alpha subunit; Identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.615
SPO0831	SPO0830	SPO0831	SPO0830	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.999
SPO0831	SPO1627	SPO0831	SPO1627	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Hypothetical protein.	0.426
SPO0831	SPO2640	SPO0831	SPO2640	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Identified by match to protein family HMM PF02625.	0.613
SPO0831	SPO2827	SPO0831	SPO2827	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Isoquinoline 1-oxidoreductase, beta subunit, putative; Identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409.	0.514
SPO0831	coxS-1	SPO0831	SPO1518	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Carbon-monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.988
SPO0831	coxS-2	SPO0831	SPO2398	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.990
SPO0831	iorA	SPO0831	SPO2826	Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.	Isoquinoline 1-oxidoreductase, alpha subunit; Identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.969
SPO1520	SPO0830	SPO1520	SPO0830	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	Xanthine dehydrogenase family protein, small/large subunits; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.919
SPO1520	SPO1627	SPO1520	SPO1627	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	Hypothetical protein.	0.631
SPO1520	SPO2640	SPO1520	SPO2640	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	Identified by match to protein family HMM PF02625.	0.699
SPO1520	SPO2827	SPO1520	SPO2827	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	Isoquinoline 1-oxidoreductase, beta subunit, putative; Identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409.	0.514
SPO1520	coxS-1	SPO1520	SPO1518	Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.	Carbon-monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.	0.934

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About