STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2828Type I secretion target repeat protein; Identified by match to protein family HMM PF00353. (692 aa)    
Predicted Functional Partners:
SPO3839
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 0.737
SPO2521
Lipoprotein, putative.
  
     0.678
SPO2612
DNA-binding protein HU, putative.
  
     0.660
SPO2352
Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.
 
0.634
SPO0362
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 
 0.596
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.585
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
  
     0.541
SPO1349
Lipoprotein, putative.
 
     0.534
SPO2292
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
 
   0.513
SPO1034
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.495
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.