STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2829Dipeptidase domain protein; Identified by similarity to SP:O85304; match to protein family HMM PF03577. (471 aa)    
Predicted Functional Partners:
SPO2834
Dipeptide ABC trasnporter, permease protein; Assignment partly based on membership in dipeptide ABC transporter gene cluster; identified by similarity to SP:P37316; match to protein family HMM PF00528.
 
    0.835
SPO2833
Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.823
SPO2835
Assignment partly based on membership in dipeptide ABC transporter gene cluster; identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
 
     0.819
SPO2832
Dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; similarity to SP:P26905; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     0.814
SPO2831
Oligopeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     0.809
SPO2830
Hypothetical protein; Identified by similarity to GB:AAN53028.1.
       0.773
SPO2836
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.750
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 
 0.557
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
   
   0.500
SPO1701
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
  
     0.470
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.