STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2837Hypothetical protein; Identified by similarity to GB:BAB51661.1. (259 aa)    
Predicted Functional Partners:
SPO1410
Identified by match to protein family HMM PF01244.
      0.900
SPO1311
Identified by match to protein family HMM PF01244.
      0.841
SPO3190
Identified by match to protein family HMM PF01244.
      0.745
SPO1542
Identified by match to protein family HMM PF01244.
      0.657
SPO1300
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.647
SPO2838
Hypothetical protein; Identified by similarity to GB:BAB50596.1; match to protein family HMM PF03928.
       0.631
SPO3387
Hypothetical protein; Identified by similarity to GB:AAK01513.1.
 
  
 0.614
SPO3465
Hypothetical protein; Identified by similarity to GB:CAE33186.1.
 
  
 0.550
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.519
SPO2607
Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.502
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.