Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2837Hypothetical protein; Identified by similarity to GB:BAB51661.1. (259 aa)    
Predicted Functional Partners:
SPO1410
Identified by match to protein family HMM PF01244.
      0.898
SPO1311
Identified by match to protein family HMM PF01244.
      0.840
SPO3190
Identified by match to protein family HMM PF01244.
      0.743
SPO1300
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.661
SPO1542
Identified by match to protein family HMM PF01244.
      0.655
SPO3387
Hypothetical protein; Identified by similarity to GB:AAK01513.1.
 
  
 0.634
SPO2838
Hypothetical protein; Identified by similarity to GB:BAB50596.1; match to protein family HMM PF03928.
       0.599
SPO3465
Hypothetical protein; Identified by similarity to GB:CAE33186.1.
 
  
 0.574
SPO0587
Hypothetical protein; Identified by similarity to GB:CAC46788.1.
 
  
 0.521
SPO2607
Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.521
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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