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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2848Hypothetical protein; Identified by similarity to SP:P51702. (175 aa)    
Predicted Functional Partners:
SPO0322
Hypothetical protein; Identified by similarity to PIR:AE3289; match to protein family HMM PF04325.
  
     0.700
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.656
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.649
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.648
ntrY
Nitrogen regulation protein ntrY; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
     0.546
SPO0425
MORN repeat protein; Identified by match to protein family HMM PF02493.
  
     0.537
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.497
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.482
SPO3462
Flagellar hook-length control protein; Identified by match to protein family HMM PF02120.
  
     0.482
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
  
     0.473
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.