Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2877Hypothetical protein; Identified by similarity to PIR:T36736. (164 aa)    
Predicted Functional Partners:
SPO2876
Membrane protein, putative.
 
     0.908
SPO2875
Hypothetical protein; Identified by similarity to GB:AAO56638.1.
 
     0.891
SPO2878
Hypothetical protein; Identified by similarity to GB:BAC48526.1.
  
    0.667
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
   
 0.600
cobL
precorrin-6Y C5,15-methyltransferase (decarboxylating); Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468.
       0.580
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.557
SPO1098
Hypothetical protein; Identified by similarity to GB:AAM43280.1.
  
     0.551
SPO1387
Cation efflux system protein; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
 0.511
soxV
Sulfur oxidation V protein; Identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683.
  
    0.469
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683.
  
    0.469
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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