Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2881Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738. (731 aa)    
Predicted Functional Partners:
coxS-2
Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
 0.992
coxS-1
Carbon-monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
 0.991
iorA
Isoquinoline 1-oxidoreductase, alpha subunit; Identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
 0.959
xdhA
Xanthine dehydrogenase, A subunit; Identified by similarity to GB:CAA04469.1.
     0.952
SPO0831
Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.
 
 0.904
SPO1520
Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.
 
 
 0.889
coxM
Carbon monoxide dehydrogenase, medium subunit; Identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450.
 
 0.885
coxG
Carbon monoxide dehydrogenase operon G protein; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
  
 0.793
SPO2640
Identified by match to protein family HMM PF02625.
 
  
 0.752
SPO2882
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
     0.700
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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