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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2884Hypothetical protein; Identified by Glimmer2; putative. (171 aa)    
Predicted Functional Partners:
SPO2885
Acetolactate synthase, catabolic, putative; Identified by similarity to SP:P27696; match to protein family HMM PF00205; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
 
     0.882
SPO2887
Hypothetical protein; Identified by similarity to GB:CAE31162.1.
 
     0.837
SPO2888
Membrane protein, putative.
 
     0.833
SPO2891
Hypothetical protein; Identified by similarity to GB:AAA85939.1.
 
     0.756
SPO2890
Glucans biosynthesis glucosyltransferase H, putative; Identified by similarity to SP:P33137.
 
     0.692
SPO2886
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
       0.566
SPO2883
Thiamine pyrophosphate-binding domain protein; Identified by match to protein family HMM PF02776.
       0.549
mdoG
Periplasmic glucan biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
 
     0.545
SPO0557
Mechanosensitive ion channel family protein.
 
     0.441
SPO0554
Glycosyl transferase, group 1 family protein.
  
     0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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