STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2892Hypothetical protein; Identified by similarity to GB:AAM38343.1. (160 aa)    
Predicted Functional Partners:
SPO2891
Hypothetical protein; Identified by similarity to GB:AAA85939.1.
 
     0.894
SPO2888
Membrane protein, putative.
  
     0.667
SPO0070
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
  
  
 0.621
SPO2890
Glucans biosynthesis glucosyltransferase H, putative; Identified by similarity to SP:P33137.
  
     0.598
SPO2887
Hypothetical protein; Identified by similarity to GB:CAE31162.1.
 
     0.597
SPO2885
Acetolactate synthase, catabolic, putative; Identified by similarity to SP:P27696; match to protein family HMM PF00205; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
  
  
 0.566
mdoG
Periplasmic glucan biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
  
     0.561
SPO2899
Selenide,water dikinase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02769.
  
  
 0.558
phaA
pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039.
       0.479
SPO2894
pH adaption potassium efflux system protein; Identified by similarity to GB:AAO56947.1; match to protein family HMM PF00420.
       0.479
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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