STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2899Selenide,water dikinase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02769. (719 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292.
    
 0.944
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 0.921
SPO2900
Hypothetical protein; Identified by similarity to GB:AAQ66871.1; Belongs to the SelU family.
   
 0.908
phaA
pH adaption potassium efflux system protein PhaA; Identified by similarity to GB:CAA63734.1; match to protein family HMM PF00361; match to protein family HMM PF04039.
  
  
 0.872
phaG
pH adaption potassium efflux system protein PhaG; Identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300.
     
 0.787
SPO2894
pH adaption potassium efflux system protein; Identified by similarity to GB:AAO56947.1; match to protein family HMM PF00420.
       0.779
phaD
pH adaption potassium efflux system protein PhaD; Identified by similarity to GB:CAA63737.1; match to protein family HMM PF00361.
     
 0.779
phaE
pH adaption potassium efflux system protein PhaE; Identified by match to protein family HMM PF01899.
       0.779
phaF
pH adaptation potassium efflux system protein PhaF; Identified by match to protein family HMM PF04066.
       0.779
putA
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.773
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.