SPO2903 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO2903

TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685. (582 aa)

Predicted Functional Partners:

SPO1186

0.714

SPO0317

0.641

SPO0094

0.575

SPO3811

0.547

SPO1416

0.541

SPO2341

0.541

SPO2769

0.541

SPO1271

0.540

SPO0872

0.527

SPO1535

0.527

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO0094	SPO0317	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	TPR domain protein; Identified by similarity to GB:CAE26481.1; match to protein family HMM PF00515.	0.507
SPO0094	SPO1186	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	TPR domain protein; Identified by similarity to PIR:AG2285; match to protein family HMM PF00515.	0.572
SPO0094	SPO1271	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Hypothetical protein; Identified by Glimmer2; putative.	0.443
SPO0094	SPO1416	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	TPR domain protein; Identified by match to protein family HMM PF00515.	0.444
SPO0094	SPO2341	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	0.444
SPO0094	SPO2769	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Hypothetical protein; Identified by similarity to GB:AAN30033.1.	0.444
SPO0094	SPO2903	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.575
SPO0317	SPO0094	TPR domain protein; Identified by similarity to GB:CAE26481.1; match to protein family HMM PF00515.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.507
SPO0317	SPO2903	TPR domain protein; Identified by similarity to GB:CAE26481.1; match to protein family HMM PF00515.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.641
SPO0872	SPO2903	Polysaccharide deacetylase family protein.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.527
SPO1186	SPO0094	TPR domain protein; Identified by similarity to PIR:AG2285; match to protein family HMM PF00515.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.572
SPO1186	SPO2903	TPR domain protein; Identified by similarity to PIR:AG2285; match to protein family HMM PF00515.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.714
SPO1271	SPO0094	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.443
SPO1271	SPO2903	Hypothetical protein; Identified by Glimmer2; putative.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.540
SPO1416	SPO0094	TPR domain protein; Identified by match to protein family HMM PF00515.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.444
SPO1416	SPO2903	TPR domain protein; Identified by match to protein family HMM PF00515.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.541
SPO1535	SPO2903	Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.527
SPO2341	SPO0094	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.444
SPO2341	SPO2903	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.	0.541
SPO2769	SPO0094	Hypothetical protein; Identified by similarity to GB:AAN30033.1.	Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.444

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2024

Credits

Access

Info

About