Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2910Identified by match to protein family HMM PF03061. (172 aa)    
Predicted Functional Partners:
SPO2911
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
 0.996
dinF
Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.836
SPO2912
Transcriptional regulator, merR family; Identified by match to protein family HMM PF00376.
  
    0.705
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.596
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.529
SPO0373
Helicase, ATP-dependent, putative.
 
   
 0.440
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 
 0.432
SPO2914
Transcriptional regulator, merR family; Identified by match to protein family HMM PF00376.
  
    0.426
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
 
    0.413
SPO1494
2-hydroxychromene-2-carboxylate isomerase, putative; This may represent a duplication of NahD in which the N-terminus copy has diverged more from NahD than the C-terminus copy; identified by match to protein family HMM PF01323.
 
     0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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