STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2914Transcriptional regulator, merR family; Identified by match to protein family HMM PF00376. (133 aa)    
Predicted Functional Partners:
SPO2915
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
    0.654
SPO2916
Hypothetical protein; Identified by Glimmer2; putative.
       0.653
SPO2912
Transcriptional regulator, merR family; Identified by match to protein family HMM PF00376.
 
    
0.577
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
     
 0.477
SPO2917
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
       0.459
SPO2913
Hypothetical protein; Identified by Glimmer2; putative.
       0.434
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.427
dinF
Identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797.
     
 0.427
SPO2911
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
    0.427
SPO2910
Identified by match to protein family HMM PF03061.
  
    0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.